A Set Of 840 Mouse Egg Genes With Well-Matched Human Homologues

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Table i, ii, iii, iv, v, vi, vii, viii, ix, x, xi, xii, xiii, xiv, xv, xvi, xvii

TABLE I

APOPTOSIS

25613        76095        IER3        6
immediate early response 3

29820        132955        BNIP3L        4
BCL2/adenovirus E1B 19kD-interacting protein 3-like

30040        12272        BECN1        3
beclin 1 (coiled-coil, myosin-like BCL2-interacting protein)

2159        79428        BNIP3        2
BCL2/adenovirus E1B 19kD-interacting protein 3

22264        11171        APG5L        2
APG5 (autophagy 5, S. cerevisiae)-like

24254        80019        PDCD6        2
programmed cell death 6

28216        112058        SIVA        2
CD27-binding (Siva) protein

692        278602        API5        1
apoptosis inhibitor 5

7353        81424        UBL1        1
ubiquitin-like 1 (sentrin)

30050        18720        PDCD8        1
programmed cell death 8 (apoptosis-inducing factor)

 

TABLE II

CELL CYCLE

22569        23960        CCNB1        26
cyclin B1

21771        14541        CUL1        22
cullin 1

6856        252587        PTTG1        16
pituitary tumor-transforming 1

7838        36794        DIP1        14
D-type cyclin interacting protein 1

18706        101874        MDM4        10
mouse double minute 4, human homolog of; p53-binding protein

29800        1634        CDC25A        8
cdc25A

22670        170027        MDM2        7
mouse double minute 2, human homolog of, p-53 binding protein

29891        170133        FOXO1A        6
forkhead box O1A (rhabdomyosarcoma)

26262        248146        MOS        5
v-mos Moloney murine sarcoma viral oncogene homolog

26412        211602        SMC1L1        5
SMC1 (structural maintenance of chromosomes 1, yeast)-like 1

16525        77597        PLK        4
polo (Drosophila)-like kinase

17851        153479        KIAA0165        4
extra spindle poles, S. cerevisiae, homolog of

25231        170263        TP53BP1        4
tumor protein p53-binding protein, 1

3049        77550        CKS1        3
CDC28 protein kinase 1

1248        114311        CDC45L        3
CDC45 (cell division cycle 45, S. cerevisiae, homolog)-like

16711        57101        MCM2        3
minichromosome maintenance deficient (S. cerevisiae) 2 (mitotin)

4683        37953        FANCC        2
Fanconi anemia, complementation group c

4742        5181        PA2G4        2
proliferation-associated 2G4, 38kD

8256        119537        SAM68        2
GAP-associated tyrosine phosphoprotein p62 (Sam68)

28165        279886        RANBPM        2
novel centrosomal protein RanBPM

28192        75737        PCM1        2
pericentriolar material 1

Mm.326        Hs.83758        CKS2        1
CDC protein kinase 2

903        75462        BTG2        1
BTG family, member 2

1466        180919        ID2        1
inhibitor of DNA binding 2, dominant negative helix-loop-helix protein

1574        123141        WASL        1
Wiskott-Aldrich syndrome-like

3141        75586        CCND2        1
cyclin D2

4933        155462        MCM6        1
minichromosome maintenance deficient (mis5, S. pombe) 6

7906        161362        PIN1        1
protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1

9648        19400        MAD2        1
MAD2 (mitotic arrest deficient, yeast, homolog)-like 2

18268        73986        CLK2        1
CDC-like kinase 2

18474        514        CCNH        1
cyclin H

20858        122552        GTSE1        1
G2- and S-phase expressed 1

22115        172405        CDC27        1
cdc27

22711        79933        CCNI        1
cyclin I

27557        150423        CDK9        1
cyclin-dependent kinase 9 (CDC2-related kinase)

29724        279862        TOK-1        1
cdk inhibitor p21 binding protein

30098        168481        MCM3AP        1
minichromosome maintenance deficient (S. cerevisiae) 3-associated protein

41486        10028        CG1I        1
putative cyclin G1 interacting protein

42149        146329        RAD53        1
protein kinase Chk2

 

TABLE III

CIRCADIAN RHYTHMS

26237        151573        CRY1        5
cryptochrome 1 (photolyase-like)

30199        79658        CSNK1E        4
casein kinase 1, epsilon

12177        74515        ARNTL        1
arylhydrocarbon receptor nuclear translocator-like

 

TABLE IV

CYTOSKELETON

3476        171271        CTNNB1        14
catenin (cadherin-associated protein), beta 1 (88kD))

22171        194662        CNN3        8
calponin 3, acidic

2654        85100        WDR1        6
WD repeat domain 1

7756        182595        DNAL4        6
dynein, axonemal, light polypolypeptide 4

4024        180370        CFL1        5
cofilin 1 (non-muscle)

7        2064        VIM        4
vimentin

24498        6895        ARPC3        4
actin related protein 2/3 complex, subunit 3 (21kD)

3110        211577        KTN1        3
kinectin 1 (kinesin receptor)

4143        104143        CLTA        3
clathrin, light polypeptide (Lca)

3529        75546        CAPZA2        2
capping protein (actin filament) muscle Z-line, alpha 2

3758        273219        BCAR1        2
breast cancer anti-estrogen resistance 1

4338        25363        PSEN2        2
presenilin 2 (Alzheimer disease 4)

4356        21223        CNN1        2
calponin 1, basic, smooth muscle

4551        155191        VIL2        2
villin 2 (ezrin)

22588        154567        SVIL        2
supervillin

29052        183706        ADD1        2
adducin 1 (alpha)

29864        82425        ARPC5        2
actin-related protein 2/3 complex, subunit 5 (16kD)

104948        170453        TMOD        2
tropomodulin

998        3260        PSEN1        1
presenilin 1 (Alzheimer disease 3)

1106        44499        PNN        1
pinin, desmosome associated protein

3414        211595        PTPN13        1
protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)

3940        95659        LLGL1        1
lethal giant larvae (drosophila) homolog 1

4415        113319        KIF2        1
kinesin heavy chain member 2

11869        430        PLS1        1
plastin 1 (I isoform)

18962        178452        CTNNA1        1
catenin (cadherin-associated protein), alpha 1 (102kD)

20354        117977        KNS2        1
kinesin 2 (60-70kD)

20893        65248        DNCI1        1
dynein, cytoplasmic, intermediate polypeptide 1

25405        40888        ARC        1
activity-regulated cytoskeleton-associated protein

35738        166011        CTNND1        1
catenin (cadherin-associated protein), delta 1

44216        125864        TMOD2        1
tropomodulin 2 (neuronal)

92529        4552        UBQLN2        1
ubiquilin 2

 

TABLE V

SECRETORY PATHWAYS, EXOCYTOSIS, ENDOCYTOSIS, ETC

412        180909        PRDX1        13
peroxiredoxin

5885        28757        TM9SF2        10
transmembrane 9 superfamily member 2

25699        80919        SYPL        8
synaptophysin-like protein

28650        286264        RAB6        8
RAB6, member RAS oncogene family

42948        146354        PRDX2        8
peroxiredoxin 2

41650        6113        STAU        6
staufen (RNA binding protein)

2795        109051        GPSN2        5
glycoprotein, synaptic 2

1117        108802        NSF        4
N-ethylmaleimide-sensitive factor

1782        79088        RCN2        4
reticulocalbin 2, EF hand calcium binding domain

21961        6551        ATP6S1        4
ATPase, H+ transporting, lysosomal (vacuolar proton pump), subunit 1

28912        115240        PEX13        4
peroxisome biogenesis factor 13

30197        184376        SNAP23        4
synaptosomal-associated protein, 23kD

930        87417        CTSL2        3
cathepsin L2

20476        86905        ATP6D        3
ATPase, H+ transporting, lysosomal (vacuolar proton pump) 42kD

28629        227881        RAB3GAP        3
RAB3 GTPase-activating protein

28925        31218        SCAMP1        3
secretory carrier membrane protein 1

29968        251376        RAB3D        3
RAB3D, member RAS oncogene family

30041        75887        COPA        3
coatomer protein complex, subunit alpha

1358        75709        M6PR        2
mannose-6-phosphate receptor (cation dependent)

1424        184161        EXT1        2
exostoses (multiple) 1

7236        89674        DDOST        2
dolichyl-diphosphooligosaccharide-protein glycosyl transferase

7515        7753        CALU        2
calumenin

14530        3642        RAB1        2
RAB1, member of RAS oncogene family

15868        7763        P115        2
vesicle docking protein p115

21905        78305        RAB2        2
RAB2, member RAS oncogene family

26422        102950        LOC51137        2
coat protein gamma - cop

26497        15827        SNX11        2
sorting nexin 11

28196        267812        SNX4        2
sorting nexin 4

29296        227949        SEC13L1        2
SEC13 (S. cerevisiae)-like 1

29541        78089        ATP6S14        2
ATPase, vacuolar, 14kD

382        154294        DLG1        1
discs, large (Drosophila) homolog 1

488        78979        GLG1        1
Golgi apparatus protein

1486        75290        ARF4        1
ADP-ribosylation factor 4

1517        24167        SYBL1        1
synaptobrevin-like 1

2277        76476        CTSH        1
cathepsin H

2386        22215        SCG3        1
secretogranin III

3479        7476        ATP6F        1
ATPase, H+ transporting, lysosomal (vacuolar proton pump) 21kD

4142        14894        TGN51        1
trans-Golgi network protein (46,48,51kD isoforms)

5396        278571        SORL1        1
sortilin-related receptor, L (DLR class) A repeats-containing

19097        8517        PSCD2        1
pleckstrin homology, Sec7 and coiled-coil domain 2 (cytohesin-2)

21752        75864        GP36B        1
endoplasmic reticulum glycoprotein

23943        9006        VAPA        1
VAMP (vesicle-associated membrane protein)-associated protein

24314        74571        ARF1        1
ADP-ribosylation factor 1

24826        19012        RAB9P40        1
Rab9 effector p40

26558        154546        STX5A        1
syntaxin 5A

28151        127416        SYNJ1        1
synaptojanin

28538        75932        NAPA        1
N-ethylmaleimide-sensitive factor attachment protein, alpha

29045        77805        ATP6E        1
ATPase, H+ transporting, lysosomal (vacuolar proton pump) 31kD

29396        118249        BIG2        1
brefeldin A-inhibited guanine nucleotide-exchange protein 2

29971        11183        SNX2        1
sorting nexin 2

 
 

TABLE VI

KINASES

29460        171811        AK2        6
adenylate kinase 2

3794        172052        STK18        4
serine/threonine kinase

29775        11463        LOC51727        4
UMP-CMP kinase

3242        1466        GK        3
glycerol kinase

188        78771        PGK1        2
phosphoglycerate kinase1

4082        157199        EMK1        2
ELKL motif kinase

12877        98338        STK13        2
serine/threonine kinase 13 (aurora/IPL 1-like)

29873        181390        CSNK1G2        2
casein kinase 1, gamma 2

30029        259855        HSU93850        2
elongation factor-2 kinase

42234        77494        DGUOK        2
deoxyguanosine kinase

6670        3136        PRKAG1        1
protein kinase, AMP-activated, gamma 1 non-catalytic subunit

9488        288417        CLK4        1
protein serine/threonine kinase Clk4

9653        9701        GADD456        1
growth arrest and DNA damage-inducible, gamma

28405        159640        SGK        1
serum/glucocorticoid regulated kinase

30039        183037        PRKAR1A        1
protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)

30212        168913        STK24        1
serine/threonine kinase 24 (Ste 20, yeast homolog)

30360        78060                1
phosphorylase kinase, beta

36810        250857        CAMK2G        1
calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma

42149        146329        RAD53        1
protein kinase Chk2

 

TABLE VII

MEMBRANE RECEPTORS, ION CHANNELS, ETC.

27872        154718        TPD52L2        9
tumor protein D52-like 2

53386        222        ITGA9        8
integrin, alpha 9

25232        227730        ITGA6        7
integrin, alpha 6

27365        166994        FAT        7
FAT tumor suppressor (Drosophila) homolog

34641        80731        AMFR        7
autocrine motility factor receptor

4046        89751        MS4A2        5
membrane-spanning 4-domains, subfamily A, member 2

814        7857        EPB41L2        4
erythrocyte membrane protein band 4.1-like 2

4603        180616        CD36L1        4
CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 1

88349        107979        SMP1        4
small membrane protein 1

22477        104624        AQP9        4
aquaporin 9

1098        278672        M11S1        3
membrane component chromosome 11, surface marker 1

1396        111967        SLC30A3        3
solute carrier family 30 (zinc transporter), member 3

4114        79748        SLC3A2        3
solute carrier family 3 (activators of dibasic and neutral amino acid transport) member 2

4715        258609        PTPRO        3
protein tyrosine phosphatase, receptor type, O

14897        161        CDH2        3
cadherin 2, N-cadherin (neuronal)

37126        12450        LOC57123        3
cadherin superfamily protein VR4-11 (protocadherin)

228        93564        HOMER-2B        2
Homer, neuronal intermediate early gene, 2

945        31137        PTPRE        2
protein tyrosine phosphatase, receptor type, E

1268        1787        PLP1        2
proteolipid protein (Pelizaeus-Merzbacher disease, spastic paraplegia 2, uncomplicated)

3771        198288        PTPRR        2
protein tyrosine phosphatase, receptor type, R

4338        25363        PSEN2        2
presenilin 2 (Alzheimer disease 4)

4489        158305        KCNH1        2
potassium voltage-gated channel, subfamily H, (eag-related), member 1

4550        78629        ATP1B1        2
ATPase, Na+/K+ transporting, beta 1 polypeptide

7821        16611        TPD52L1        2
tumor protein D52-like 1

13799        6527        GPR56        2
G protein-coupled receptor 56

18503        11342        NINJ1        2
ninjurin 1

21173        6418        LOC51210        2
seven transmembrane domain orphan receptor

21482        84974        CLNS1A        2
chloride channel, nucleotide-sensitive, 1A

21634        152009        GPR85        2
G protein-coupled receptor 85

28535        82042        SLC23A1        2
solute carrier family 23 (nucleobase transporters), member 1

28842        174139        CLCN3        2
chloride channel 3

42255        1526        ATP2A2        2
ATPase Ca
2+ transporting, cardiac muscle, slow twitch 2

198        112986        TMEM5        1
transmembrane protein 5

424        76941        ATP1B3        1
ATPase, Na/K transporting, beta polypeptide

784        277721        M17S2        1
membrane component, chromosome 17, surface marker 2 (ovarian carcinoma antigen CA125)

806        54457        CD81        1
CD81 antigen (target of antiproliferative antibody 1)

856        3337        TM4SF1        1
transmembrane 4 superfamily member 1

998        3260        PSEN1        1
presenilin 1 (Alzheimer disease 3)

2580        82109        SDC1        1
syndecan 1

2752        1906        PRLR        1
prolactin receptor

3249        73964        EPHA4        1
EphA4

4005        30942        EFNB2        1
ephrin-B2

4168        110736        SLC12A2        1
solute carrier family 12 (sodium/potassium/chloride transporter), member 2

4394        81665        KIT        1
v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog

4658        2877        CDH3        1
cadherin 3, P-cadherin (placental)

4676        153985        SLC7A2        1
solute carrier family 7 (cationic amino acid transporter, Y+ system), member 2

5045        75317        SLC16A2        1
solute carrier family 16 (monocarboxylic acid transporter), member 2 (putative transporter)

7221        89137        LRP1        1
low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor)

7339        5372        CLDN4        1
claudin 4

9911        10082        KCNN4        1
potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4

10100        262960        TRPC4        1
transient receptor potential channel 4

14926        606        ATP7a        1
ATPase, Cu
2+ transporting, alpha polypeptide (Menkes syndrome)

15125        6354        SDFR1        1
stromal cell derived factor receptor 1

18300        239106        SLC3A1        1
solute carrier family (cystine, dibasic and neutral amino acid transporter, activator of cystine, dibasic and neutral amino acid transport) member 1

18733        193923 retired, 199199        KCNE3        1
potassium voltage-gated channel, Isk-related family, member 3

22684        82921        SLC35A1        1
solute carrier family 35 (CMP-sialic acid transporter) member 1

25834        1194        SLC6A6        1
solute carrier family 6 (neurotransmitter transporter, taurine), member 6

27435        272260        LOC51310        1
hBOIT for potent brain-type organic ion transporter

27801        112282        SLC30A4        1
solute carrier family (zinc transporter), member 4

27861        9610        P2RX4        1
purinergic receptor P2X, ligand-gated ion channel, 4

28063        15196        PMI        1
putative receptor protein

28686        5599        EGFL5        1
EGF-like domain, multiple 5

28484        100090        TSPAN-3        1
tetraspan 3

28756        5944        SLC11A3        1
solute carrier family 11 (proton-coupled divalent metal ion transporters), member 3

29350        1501        SDC2        1
syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)

29373        211819        MMP23B        1
matrix metalloproteinase 23B

31927        20709        TSPAN-5        1
tetraspan 5

34411        83347        AAMP        1
angio-associated, migratory cell protein

34564        157145        TETRAN        1
tetracycline transporter-like protein

35670        248960        ABCC9        1
ATP-binding cassette, sub-family C (CFTR/MRP), member 9

39089        87223        BMPR1B        1
bone morphogenetic protein receptor, type 1B

41213        6129        ABCB9        1
ATP-binding cassette, sub-family B (MDR/TAP), member 9

41495        239155        LOC51123        1
NY-REN-45 antigen

42133        22958        HSA272268        1
calcium channel alpha 2-delta 3 subunit

110329        8074        BAI3        1
brain-specific angiogenesis inhibitor 3

TABLE VIII

MITOCHONDRIA

28733        74649        COX6C        13
cytochrome c oxidase subunit VIc

28748        76205        CYP11A        11
cytochrome P450, subfamily XIA (cholesterol side chain cleavage)

27561        74649        COX6C        9
cytochrome c oxidase subunit VIc

7039        31334        TOM        3
putative mitochondrial outer membrane protein import receptor

26949        169919        ETFA        3
electron-transfer-flavoprotein, alpha polypeptide (glutamic aciduria II)

2368        20716        TIM17        2
translocase of inner mitochondrial membrane 17 (yeast) homolog A

22227        3577        SDHC        2
succinate dehydrogenase complex, subunit c, integral membrane protein, 15kD

29900        3273        TSFM        2
Ts translation elongation factor, mitochondrial

43786        3462        COX7C        2
cytochrome c oxidase subunit VIIc

116988        149894        MTIF2        2
mitochondrial translational initiation factor 2

3533        211929        TXN2        1
thioredoxin, mitochondrial

3711        93201        GPD2        1
glycerol-3-phosphate dehydrogenase 2 (mitochondrial)

7319        95998        FRDA        1
Friedrich ataxia

14663        107476        ATP5JG        1
ATPsynthase, H
+ transporting, mitochondrial F1F0, subunit g

21826        109571        TIMM10        1
translocase of inner mitochondrial membrane 10 (yeast) homolog

22514        89761        ATP5D        1
ATP synthase, H+ transporting mitochondrial F1 complex, delta subunit

24463        21198        TOMM70A        1
translocase of outer mitochondrial membrane 70 (yeast) homolog A

28336        30661        ETFDH        1
electron-transferring-flavoprotein dehydrogenase

29828        74649        COX6C        1
cytochrome c oxidase subunit VIc

29884        76893        BDH        1
3-hydroxybutyrate, dehydrogenase (heart, mitochondrial)

30200        74047        ETFB        1
electron-transfer-flavoprotein, beta polypeptide

41766        75133        TCF6L1        1
transcription factor 6-like 1 (mitochondrial transcription factor 1-like)

 

TABLE IX

STRUCTURAL NUCLEAR PROTEINS

6343        173205        NPM1        19
nucleophosmin (nucleolar phosphoprotein B23, numatrin)

35698        172108        NUP88        14
nucleoporin 88kD

963        82124        LAMB1        8
laminin, beta 1

6957        79110        NCL        6
nucleolin

7141        78996        PCNA        6
proliferating cell nuclear antigen

168        278367        NPM1P14        5
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 14
)
89137        808        HNRPF        5
heterogeneous nuclear ribonucleoprotein F

2283        172609        NUCB1        3
nucleobindin 1

13356        9082        NUP54        3
nucleoporin p54

10303        119908        NOP5/NOP58        2
nucleolar protein NOP5/NOP58

25575        78825        MATR3        2
matrin 3

28964        211608        NUP153        2
nucleoporin 153kD

4503        169984        NP220        1
nuclear protein

4907        79110        NCL        1
nucleolin

7516        243886        NASP        1
nuclear autoantigenic sperm protein (histone-binding)

22667        151734        PP15        1
nuclear transport factor 2 (placental protein 15)

24729        4747        DKC1        1
dyskeratonin congenita 1 dyskenin

26718        21479        UBN1        1
ubinuclein 1

TABLE X

PHOSPHATASES

28909        227777        PTP4A1        19
protein tyrosine phosphatase type IVA, member 1

6355        82911        PTP4A2        18
protein tyrosine phosphatase type IVA, member 2

27978        91448        MKP-L        10
MKP1-like protein tyrosine phosphatase

29800        1634        CDC25A        8
cdc25A

7793        79081        PPP1CC        4
protein phosphatase 1, catalytic subunit, gamma isoform

3766        57764        PPM1A        3
protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform

4715        258609        PTPRO        3
protein tyrosine phosphatase, receptor type, O

945        31137        PTPRE        2
protein tyrosine phosphatase, receptor type, E

3771        198288        PTPRR        2
protein tyrosine phosphatase, receptor type, R

4420        155693        PTPN21        2
protein tyrosine phosphatase, non-receptor type 21

6510        35        PTPN7        2
protein tyrosine phosphatase, non-receptor type 7

28030        3843        DUSP7        2
dual specificity phosphatase 7

28618        179574        PPP2R2A        2
protein phosphatase 2 (formerly 2A), regulatory subunit B (PR52), alpha isoform

28918        5687        PPM1B        2
protein phosphatase 1B (formerly 2C), magnesium-dependent, beta isoform

985        82829        PTPN2        1
protein tyrosine phosphatase, non-receptor type 2

2395        118244        PPP2R5D        1
protein phosphatase 2, regulatory subunit B (B56), delta isoform

3414        211595        PTPN13        1
protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)

27163        16533        MYPT1        1
myosin phosphatase, target subunit 1

29545        78016        PNKP        1
polynucleotide kinase 3'-phosphatase

30252        6979 retired, 272458                1
protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform (calcineurin A alpha)

61848        100980        PPM1D        1
protein phosphatase 1D magnesium-dependent, delta isoform

TABLE XI

PROTEIN DEGRADATION

19060        118797        UBE2D3        44
ubiquitin conjugating enzyme E2D 3 (homologous to yeast UBC4/5)

21771        14541        CUL1        22
cullin 1

1570        108332        UBE2D2        12
ubiquitin conjugating enzyme E2D2 (homologous to yeast UBC4/5)

21114        22466        USP19        9
ubiquitin specific protease 19

396        77578        USP9X        8
ubiquitin specific protease 9, X chromosome (Drosophila fat facets related)

24156        76917        FBXO8        7
F-box only protein

24280        23168        USP15        7
ubiquitin-specific protease 15

27558        193725        PSMD5        6
proteasome (prosome, macropain) 26S subunit, non-ATPase, 5

5203        28505        UBE2H        4
ubiquitin-conjugating enzyme E2H (homologous to yeast UBC8)

29012        24307        FBXW3        4
f-box and WD-40 domain protein 3

28017        21229        FBXW1B        3
f-box and WD-40 domain protein 1B

24874        3887        PSMD1        2
proteasome (prosome, macropain) 26S subunit, non-ATPase, 1

27496        35086        USP1        2
ubiquitin specific protease 1

27541        80612        UBE2A        2
ubiquitin-conjugating enzyme E2A (RAD 6 homolog)

28232        27197        KIAA0797        2
SUMO-1-specific protease

89830        93002        UBCH10        2
ubiquitin carrier protein E2-C

2141        152978        PSME3        1
proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki)

2982        82646        HSPF1        1
heat shock 40kD protein 1

3571        3759        USP5        1
ubiquitin specific protease 5 (isopeptidase T)

8911        78596        PSMB5        1
proteasome (prosome, macropain) subunit, beta type, 5

12194        9736        PSMD3        1
proteasome (prosome, macropain) 26S subunit, non-ATPase, 3

12665        78946        CUL3        1
cullin 3

12914        125902        USP2        1
ubiquitin specific protease 2

22276        183874        CUL4A        1
cullin 4A

26234        75981        USP14        1
ubiquitin-specific protease 14 (tRNA-guanine transglycosylase)

27423        180686        UBE3A        1
ubiquitin protein ligase E3A (human papilloma virus E6-associated protein, Angelman syndrome)

28269        226573        IKBKB        1
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase, beta

34837        75748        PSMB1        1
proteasome (prosome, macropain) subunit, beta type, 1

92529        4552        UBQLN2        1
ubiquilin 2

TABLE XII

PROTEIN SYNTHESIS


12858        129673        EIF4A1        26
eukaryotic translation initiation factor 4A, isoform 1

28839        78592        EIF2B1        15
eukaryotic translation initiation factor 2B, subunit (alpha, 26kD)

43239        29797        RPL10        13
ribosomal protein L10

35618        158688        IF2        7
translation initiation factor

5290        82202        RPL17        6
ribosomal protein L17

6957        77039        RPS3A        6
ribosomal protein S3A

22723        184776        RPL23A        6
ribosomal protein L23a

525        183684        EIF4G2        4
eukaryotic translation initiation factor 4 gamma, 2

3428        184582        RPL24        4
ribosomal protein L24

16323        173912        EIF4A2        4
eukaryotic translation initiation factor 4A, isoform 2

3486        119598        RPL3        3
ribosomal protein L3

725        99858        RPL7A        3
ribosomal protein L7a

880        106673        EIF3S6        3
eukaryotic translation initiation factor 3, subunit 6 (48kD)

16775        180450        RPS24        3
ribosomal protein S24

29192        181311        NARS        3
asparaginyl-tRNA synthetase

1129        182426        RPS2        2
ribosomal protein S2

4419        180946        RPL5        2
ribosomal protein L5

13020        119122        RPL13A        2
ribosomal protein L13a

29144        84131        TARS        2
threonyl-tRNA synthase

43452        82148        RPS12        2
ribosomal protein S12

104828        192023        EIF3S2        2
eukaryotic translation initiation factor 3, subunit 2 (beta, 36kD)

588        174131        RPL6        1
ribosomal protein L6

2235        183698        RPL29        1
ribosomal protein L29

12144        3254        RPL23L        1
ribosomal protein L23-like

13427        211568        EIF4G1        1
eukaryotic translation initiation factor 4 gamma, 1

13917        288353        RPL22        1
ribosomal protein L22

14244        157850        RPL9        1
ribosomal protein L9

14245        251247        RPLP2        1
ribosomal protein, large P2

22363        15395        LOC57038        1
similar to arginyl-tRNA synthetase (arginine-tRNA ligase)

22399        81613        EIF2S1        1
eukaryotic translation initiation factor 2, subunit 1 (alpha, 35kD)

24174        75102        AARS        1
alanyl-tRNA synthetase

27403        23111        FARSL        1
phenylalanine-tRNA synthetase-like

28922        9081        PheHB        1
phenylalanyl-tRNA synthetase beta-subunit

28985        111611        RPL27        1
ribosomal protein L27

29041        17001        EIF2B2        1
eukaryotic translation initiation factor 2B, subunit 2 (beta, 39kD)

29676        119140        EIF5A        1
eukaryotic translation initiation factor 5A

37581        539        RPS29        1
ribosomal protein S29

39130        76230        RPS10        1
ribosomal protein S10

TABLE XIII

SECRETED PROTEINS

21702        274404        PLAT        26
plasminogen activator, tissue

321        313        SPP1        12
secreted phosphoprotein 1 osteopontin, bone sialoprotein I (early T-lymphocyte activation 1)

18213        169300        TGFB2        10
transforming growth factor, beta 2

96671        61418        MFAP1        6
microfibrillar-associated protein 1

935        118684        SDF2        4
stromal cell-derived factor 2

795        173894        CSF1        3
colony stimulating factor

1100        1734        INHA        2
inhibin, alpha

35439        111779        SPARC        2
secreted protein, acidic, cysteine-rich (osteonectin)

1381        250867        ZP3A        1
zona pellucida glycoprotein 3A (sperm receptor)

2970        621        LGALS3        1
lectin, galactose-binding, soluble, 3 (galectin 3)

4352        83164        COL15A1        1
collagen, type XV alpha 1

10805        211933        COL13A1        1
collagen, type XIII, alpha 1

22194        1908        PRG1        1
proteoglycan 1, secretory granule

23835        9914        FST        1
follistatin

25347        11494        FBLN5        1
fibulin 5

34692        180884        CPB1        1
carboxypeptidase B1 (tissue)

88793        90765        FGA        1
fibrinogen, A alpha polypeptide lectin, galactoside-binding, soluble, 3 (galectin 3)

TABLE XIV

SIGNALLING PATHWAYS

1603        16003        RBBP4        90
retinoblastoma-binding protein 4

28262        78944        RGS2        29
regulator of G protein signaling 2, 24kD

22327        138617        TRIP12        8
thyroid hormone receptor interactor 12

28761        155206        STK25        8
serine/threonine kinase (Ste 20, yeast homolog)

21396        61828        APPBP1        6
amyloid beta precursor protein-binding protein 1, 59kD

44606        268562        RGSZ2        6
regulator of G-protein signaling 17

25789        865        RAP1A        5
RAP1A, member of RAS oncogene family

2533        83050        PIK3R4        4
phosphoinositide-3-kinase, regulatory subunit 4, p150

3794        172052        STK18        4
serine/threonine kinase

13835        169965        CHN1        4
chimerin (chimaerin) 1

28598        50651        JAK1        4
Janus kinase 1 (a protein tyrosine kinase)

28836        70983        PARG1        4
PTPL1-associated RhoGAP1

41040        82035        LOC51306        4
GAP-like protein

695        24752        SSH3BP1        3
spectrin SH3 domain binding protein 1

1781        2488        LCP2        3
lymphocyte cytosolic protein 2 (SH2-containing leukocyte protein of 76 kD)

2012        2132        EPS8        3
epidermal growth factor receptor pathway substrate 8

4558        194148        YES1        3
v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1

7353        81424        UBL1        3
ubiquitin-like 1 (sentrin)

10331        76090        TNFAIP1        3
tumor necrosis factor alpha-induced protein 1 (endothelial)

22073        70312        CRK        3
v-crk avian sarcoma virus CT10 oncogene homolog

27560        156764        RAP1B        3
RAP1B (member of RAS oncogene family)

29194        5392        DKFZP343L1021        3
potassium channel modulatory factor

30021        8108        DAB1        3
disabled (Drosophila) homolog 1

30217        10803        SIP2-28        3
calcium and integrin binding protein (DNA-dependent protein kinase interacting protein)

304        75770        RB1        2
retinoblastoma 1 (including osteosarcoma)

1803        146847        TANK        2
TRAF family member-associated NFKB activator

2489        181015        STAT6        2
signal transducer and activator of transcription 6, interleukin-4 induced

2998        121033        NEDD1        2
neural precursor cell expressed, developmentally down-regulated 1

3758        273219        BCAR1        2
breast cancer anti-estrogen resistance 1

3948        142258        STAT3        2
signal transducer and activator of transcription 3 (acute-phase response factor)

4082        157199        EMK1        2
ELKL motif kinase

4475        159494        BTK        2
Bruton agammaglobulinemia tyrosine kinase

6456        57856        PFTK1        2
PFTAIRE protein kinase 1

15185        79067        MAD1        2
MAD (mothers against decapentaplegic, Drosophila) homolog 1

21209        27181        NRBF-2        2
nuclear receptor binding factor-2

21876        20447        PAK4        2
protein kinase related S. cerevisiae STE20, effector for cdc42Hs

22029        272736        NRBP        2
nuclear receptor binding protein

22322        50612        GNA14        2
guanine nucleotide binding protein (G protein), alpha 14

27923        118021        ABR        2
active BCR-related gene

28618        179574        PPP2R2A        2
protein phosphatase 2 (formerly 2A), regulatory subunit B (PR52), alpha isoform

29873        181390        CSNK1G2        2
casein kinase 1, gamma 2

30126        107014        MIR16        2
membrane interacting protein of RGS16

38665        6241        PIK3R1        2
phosphoinositide-3-kinase regulatory sub-unit, polypeptide 1 (p85 alpha)

968        100221        NR1H2        1
nuclear receptor family 1, group H, member 2

1059        3446        MAP2K1        1
mitogen-activated ptotein kinase kinase 1

2038        220689        G3BP        1
Ras-GTPase-activating protein SH3-domain-binding protein

3414        211595        PTPN13        1
protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)

4521        8375        TRAF4        1
TNF receptor-associated factor 4

8385        861        MAPK3        1
mitogen-activated protein kinase 3

9488        2888417        CLK4        1
protein serine/threonine kinase Clk4

9590        96200        NAKAP95        1
neighbour of A-kinase anchoring protein 95

15985        21970        GNG3LG        1
guanine nucleotide binding protein (G protein), gamma 3, linked

22612        30327        MAPKAPK5        1
mitogen-activated protein kinase-activated protein kinase 5

22724        27182        PLAA        1
phospholipase A2-activating protein

23755        279582        LOC51128        1
GTP-binding protein Sara

23846        6685        TRIP8        1
thyroid hormone receptor interactor 8

27307        179915        GNG3        1
guanine nucleotide binding protein (G protein), gamma 3

27491        75217        MAP2K4        1
mitogen-activated protein kinase 4

27592        159613        AIB3        1
thyroid hormone receptor binding protein

28015        15456        PDZK1        1
PDZ domain-containing 1

28084        74576        GDI1        1
GDP dissociation inhibitor 1

28163        13014        ARFGAP1        1
ADP-ribosylation factor GTPase activating protein 1

28269        226573        IKBKB        1
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase, beta

28414        5464        SMAP        1
thyroid hormone receptor coactivating protein

28479        81915        LAP18        1
leukemia-associated phosphoprotein p18 (stathmin)

28692        109727        KIAA0733        1
TAK1-binding protein 2; KIAA0733 protein

29725        75074        MAPKAPK2        1
mitogen-activated protein kinase-activated protein kinase 2

30039        183037        PRKAR1A        1
protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)

30212        168913        STK24        1
serine/threonine kinase 24 (Ste 20, yeast homolog)

31240        2890        PRKCG        1
protein kinase C, gamma

31533        4994        TOB2        1
transducer of ERBB2, 2

32714        46571        SH3D1B        1
SH3 domain protein 1B

36776        244542        SHB        1
SHB adaptor protein (a Src homology 2 protein)

36810        250857        CAMK2G        1
calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma

38878        78993        IQGAP2        1
IQ motif containing GTPase activating protein 2

39038        6453        ITPK1        1
inositol-1,3,4-trisphosphate 5/6 kinase

42149        146329        RAD53        1
protein kinase Chk2

TABLE XV

DNA, CHROMATIN

18516        180877        H3F3B        21
H3 histone, family 3B (H3.3B)

29663        317        TOP1        14
topoisomerase (DNA)1

89136        249247        FBRNP        13
heterogeneous nuclear protein similar to rat helix destabilizing protein

631        144321        HMG1        10
high-mobility group (non-histone chromosomal) protein 1

3797        179662        NAP1L1        7
nucleosome assembly protein 1-like 1

29186        21189        HIRIP4        6
HIRA interacting protein (dnaJ-like)

2805        1560        KIAA0086        5
homolog of yeast DNA-crosslink repair gene SNM1

7814        77462        DNMT1        5
DNA (cytosine-5-)-methyltransferase 1

27218        173714        KIAA0026        5
MORF-related gene X

916        119192        H2AFZ        4
H2A histone family, member Z

2025        77306        SMN1        4
survival of motor neuron 1, telomeric

29825        9456        SMARCA5        4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

34988        47504        EXO1        4
exonuclease 1

1693        80684        HMG2        3
high mobility group (non-histone chromosomal) protein 2

911        181163        HMG17        2
high-mobility group (non-histone chromosomal) protein 17

2831        78103        NAP1L4        2
nucleosome assembly protein 1-like 4

6461        171545        HRB        2
HIV-1 Rev binding protein

21772        250581        SMARCD2        2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2

24350        226117        H1F0        2
H1 histone family, member 0

29504        182255        NHP2L1        2
non-histone chromosome protein 2 (S. cerevisiae)-like 1

69        263812        NUDC        1
nuclear distribution gene C homolog

340        19114        HMG4        1
high-mobility group (non-histone chromosomal) protein 4

2485        15164        C1D        1
nuclear DNA-binding protein

2627        84981        XRCC5        1
X-ray repair complementing repair in Chinese hamster cells 5
(double-strand-break rejoining; Ku autoantigen, 80kD)

4347        98493        XRCC1        1
X-ray repair complementing defective repair in Chinese hamster cells 1

5001        241565        DNMT3A        1
DNA (cytosine-5-)-methyl transferase 3 alpha

5875        42343        MOF        1
member of MYST family histone acetyltransferases, homolog of Drosophila MOF

6509        923        SSBP        1
single-stranded DNA binding protein

6979        97681        DNMT2        1
DNA (cytosine-5-)-methyltransferase 2

7516        243886        NASP        1
nuclear autoantigenic sperm protein (histone-binding)

8709        78353        SRPK2        1
SFRS protein kinase 2 (protein kinase, serine/arginine-specific, 2)

9199        99185        POLE2        1
polymerase (DNA directed), epsilon 2

15694        172350        HIRA        1
HIR (histone cell cycle regulation defective, S. cerevisiae) homolog A

23809        17368        HIRIP5        1
HIRIP5 protein

25289        100669        RAD51L        1
RAD51 (S. cerevisiae)-like 1

25150        92260        HMG2L1        1
high mobility group protein 2-like 1

26116        159971        SMARCB1        1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

28426        21907        HBOA        1
histone acetyltransferase

28968        285860        NCBP2        1
nuclear cap binding protein subunit 2, 20kD

29546        274350        ACTL6        1
actin-like 6

30098        168481        MCM3AP        1
minichromosome maintenance deficient (S. cerevisiae) 3-associated protein

30998        27590        MORF        1
histone acetyltransferase

34371        96264        ATRX        1
alpha thalassemia/mental retardation syndrome X-linked (RAD54 (S. cerevisiae) homolog)

 

TABLE XVI

RNA, TRANSCRIPTION

31        16003        RBBP4        90
retinoblastoma-binding protein 4

2411        6727        KIAA0660        63
Ras GTP-ase activating protein SH3 domain-binding protein 2

28261        99908        NCOA4        15
nuclear receptor coactivator 4

18459        147916        DDX3        11
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3

27213        258561        GTF2B        11
general transcription factor IIB

14198        75878        EDR2        10
early development regulator 2 (homolog of polyhomeotic 2)

21953        129548        HNRPK        10
heterogeneous nuclear ribonucleoprotein K

118        20985        SAP30        9
Sin3-associated polypeptide, 30kD

4303        77256        EZH2        9
enhancer of zeste (Drosophila) homolog 2

379        2331        E2F5        8
E2F transcription factor 5, p130-binding homolog

4381        74592        SATB1        8
special AT-rich sequence binding protein 1

12267        169900        PABPC4        8
poly(A)-binding protein, cytoplasmic 4 (inducible form)

18210        3248        MSH6        8
mutS (E. coli) homolog 6

24859        28166        CRSP8        8
cofactor required for Sp1 transcriptional activation, subunit 8 (34kD)

27235        169363        GLE1L        8
GLE (yeast homolog)-like, RNA export mediator

1538        101025        BTF3        7
basic transcription factor 3

29685        74711        SPF31        7
splicing factor similar to dnaJ

2115        103804        HNRPU        6
heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor)

7335        2110        ZNF9        6
zinc finger protein 9 (a cellular retroviral nucleic acid binding protein)

19101        76053        DDX5        6
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kD)

42944        182643        TCEB1L        6
transcription elongation factor B (SIII), polypeptide 1-like

566        153138        ORC5L        5
origin recognition complex, subunit 5 (yeast homolog)-like

966        74861        PC4        5
activated RNA polymerase II transcription cofactor 4

2904        3776        ZNF216        5
zinc finger protein 216

6787        167460        SFRS3        5
splicing factor, arginine/serine-rich 3

27118        30299        IMP-2        5
IGF-II mRNA binding protein 2

27927        249495        HNRPA1        5
heterogeneous nuclear ribonucleoprotein A1

34296        91142        KHSRP        5
KH-type splicing regulatory protein (FUSE binding protein 2

87235        78869        TCEA1        5
transcription elongation factor A (SII), 1

925        79353        TFDP1        4
transcription factor Dp-1

2591        182225        RBM3        4
RNA binding motif protein 3

2904        3776        ZNF216        4
zinc finger protein 216

4563        211581        MTF1        4
metal-regulatory transcription factor 1

16533        171880        POLR2A        4
polymerase (RNA) II (DNA directed) polypeptide A (220kD)

27509        83126        TAF2I        4
TATA box binding protein (TBP)-associated factor, RNA polymerase II, I, 28kD

28910        26703        POP2        4
POP2 (yeast homolog)

603        86948        SNRPD1        3
small nuclear ribonucleoprotein D1 polypeptide (16kD)

1246        80645        IRF1        3
interferon regulatory factor

1323        82575        SNRPB2        3
small nuclear ribonucleoprotein polypeptide "B"

1951        75104        RNPS1        3
RNA binding protein S1, serine-rich domain

4929        797        NFYA        3
nuclear transcription factor Y, alpha

6743        83469        NFE2L1        3
nuclear factor (erythroid-derived-2)-like 1

7861        170311        HNRPDL        3
heterogeneous nuclear ribonucleoprotein D-like

14644        75066        TSN        3
translin

15928        279784        PREB        3
prolactin regulatory element binding

16767        75598        HNRPA2B1        3
heterogeneous nuclear ribonucleoprotein A2/B1

18643        166204        PHF1        3
PHD finger protein 1

22249        108139        ZNF212        3
zinc finger protein 212

25450        109643        PAIP1        3
polyadenylate binding protein-interacting protein 1

28343        110713        DEK        3
DEK oncogene (DNA binding)

29253        171185        P38IP        3
transcription factor (p38 interacting protein)

39082        121044        TAF1B        3
TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kD

161        34012        BRCA2        2
breast cancer 2, early onset

304        75770        RB1        2
retinoblastoma 1 (including osteosarcoma)

641        181243        ATF4        2
activating transcription factor 4 (tax-responsive enhancer element B67)

809        115541        SRP14        2
signal recognition particle 14kD (homologous Alu RNA-binding protein)

850        180394        SRP14        2
signal recognition particle 14kD

2655        15020        QK1        2
homolog of mouse quaking QK1 (KH domain RNA binding protein)

3466        198166        ATF2        2
activating transcription factor 2

3879        197540        HIF1A        2
hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)

3931        42712        MAX        2
MAX protein

8581        11776        HPRP3P        2
U4/U6-associated RNA splicing factor

8884        81328        NFKBIA        2
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha

15781        93649        USF2        2
upstream transcription factor 2, c-fos interacting

21209        27181        NRBF-2        2
nuclear receptor binding factor-2

21841        73965        SFRS2        2
splicing factor, arginine/serine-rich 2

22029        272736        NRBP        2
nuclear receptor binding protein

22718        149923        XBP1        2
X-box binding protein 1

28295        64542        CFIM        2
pre-mRNA cleavage factor Im(68kD)

29089        2853        PCBP1        2
poly(rC)-binding protein 1

29737        79026        MLF2        2
myeloid leukemia factor 2

29841        79024        HNRPM        2
heterogeneous nuclear ribonucleoprotein M

29915        184167        SFRS7        2
splicing factor, arginine/serine-rich 7 (35kD)

30019        193989        TARDBP        2
TAR DNA binding protein

30029        259855        HSU93850        2
elongation factor-2 kinase

30929        24644        TAF2C1        2
TATA box binding protein (TBP)-associated factor, RNA polymerase II, C1, 130kD

38869        75251        DDXBP1        2
DEAD/H (Asp-Glu-Ala-Asp/His) box binding protein 1

89123        2815        POU6F1        2
POU domain, class 6, transcription factor 1

24        81361        HNRPAB        1
heterogeneous nuclear ribonucleoprotein A/B

439        153768        U3-55K        1
U3 SnoRNP-associated 55-kDa protein

460        70186        SUPT5H        1
suppressor of Ty (S. cerevisiae) 5 homolog

542        6106        RBM4        1
RNA binding motif protein 4

968        100221        NR1H2        1
nuclear receptor family 1, group H, member 2

1025        155396        NFE2L2        1
nuclear factor (erythroid-derived 2)-like 2

1466        180919        ID2        1
inhibitor of DNA binding 2, dominant negative helix-loop-helix protein

1661        174051        SNRP70        1
small nuclear ribonucleoprotein 70kD polypeptide (RNP antigen)

1764        78915        GABPB1        1
GA-binding protein transcription factor, beta subunit 1 (53kD)

2706        460        ATF        1
activating transcription factor 3

2984        30035        SFRS10        1
splicing factor, arginine/serine-rich (transformer 2 Drosophila homolog) 10

3182        14453        ICSBP1        1
interferon consensus sequence binding protein 1

3451        89764        FMR1        1
fragile X mental retardation

3680        7797        TINF2        1
TERF1 (TRF1)-interacting nuclear factor 2

4808        306        HIVEP1        1
human immunodeficiency virus type I enhancer-binding protein 1

4888        41587        RAD50        1
RAD50 (S. cerevisiae) homolog

9558        173854        PAXIP1L        1
PAX transcription activation domain interacting protein 1 like

12553        115474        RFC3        1
replication factor C (activator 1) 3 (38kD)

12604        31176        SIRT1        1
Sir2-like 1

12848        49346        SRP54        1
signal recognition particle 54kD

13120        96103        TAF2D        1
TATA box binding protein (TBP)-associated factor, RNA polymerase II, D, 100kD

18892        2985        EMD        1
emerin (Emery-Dreifuss muscular dystrophy)

19170        78935        MNPEP        1
methionine aminopeptidase; eIF-2-associated p67

21203        194718        ZNF265        1
zinc finger protein 265methionine aminopeptidase; eIF-2-associated p67

21534        75117        ILF2        1
interleukin enhancer binding factor 2, 45kD

21649        119018        NRF        1
transcription factor NRF

21740        245710        HNRPH1        1
heterogeneous nuclear ribonucleoprotein H1(H)

21811        184693        TCEB1        1
transcription elongation factor B (SIII), polypeptide 1 (15kD, elongin C)

22162        209450        SPF45        1
splicing factor (45kD)

22421        75839        ZNF6        1
zinc finger protein 6 (CMPX1)

25228        96334        RNF11        1
ring finger protein 11

22617        79625        HNRPD        1
heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA-binding protein 1, 37kD)

22700        89578        GTF2H1        1
general transcription factor IIH, polypeptide 1 (62kD subunit)

23805        12719        RENT1        1
regulator of nonsense transcripts 1

24102        108371        E2F4        1
E2F transcription factor 4, p107/p130-binding

24431        123057        TAF2K        1
TATA box binding protein (TBP)-associated factor, RNA polymerase II, K, 18kD

25364        195614        SF3B3        1
splicing factor 3b, subunit 3, 130kD

25642        227280        LSM5        1
U6 snRNA-associated Sm-like protein

25779        77897        SF3A3        1
splicing factor 3a, subunit 3, 60kD

27220        168157        NFYC        1
nuclear transcription factor Y, gamma

27600        237825        SRP72        1
signal recognition particle 72kD

27706        6856        ASH2L        1
ash 2 (absent, small, or homeotic, Drosophila, homolog)-like

28018        821        ZFP92        1
zinc finger protein homologous to Zfp92 in mouse

28028        154583        RBM10        1
RNA binding motif protein 10

28200        112722        SLU7        1
step II splicing factor SLU7

28961        9605        CFIM25        1
pre-mRNA cleavage factor Im (25kD)

29452        2943        SRP19        1
signal recognition particle 19kD

29466        21599        KLF7        1
Kruppel-like factor 7 (ubiquitous)

29563        93868        PHF2        1
PHD finger protein 2

29655        273307        SRP68        1
signal recognition particle 68kD

29877        80248        RBPMS        1
RNA-binding protein gene with multiple splicing

30036        25732        EIF4G3        1
eukaryotic translation initiation factor 4 gamma, 3

30714        27801        ZNF278        1
zinc finger protein 278

34091        145078        ROD1        1
regulator of differentiation (in S. pombe) 1

35851        23964        SAP18        1
sin3-associated, 18kD

36718        256549        NUBP2        1
nucleotide binding protein 2 (E. coli MinD like)

43331        166975        SFRS5        1
splicing factor, arginine/serine-rich 5

44728        125244        RAD51L3        1
RAD51 (S. cerevisiae)-like 3

46507        164915        SNAPC3        1
small nuclear RNA activating complex, polypeptide 3, 50kD

100210        89421        CIR        1
CBF1 interacting co-repressor

105175        79440        KOC1        1
IGF-II mRNA-binding protein

 

TABLE XVII

HETEROGENEOUS

22706        198365        BPGM        51
2,3-bisphosphoglycerate mutase

7719        431        BMI1        27
murine leukemia viral (bmi-1) oncogene homolog

28848        54642        TGR        26
dTP-4-keto-6-deoxy-D-glucose 4-reductase

77432        179526        VDUP1        19
upregulated by 1,25-dihydroxyvitamin D-3

9745        234489        LDHB        18
lactate dehydrogenase B

14816        125031        CEPT1        16
choline/ethanolamine phosphotransferase

22317        110480        DC12        10
DC12 protein

28047        20597        LCP        10
host cell factor homolog

25377        2879        CPA1        9
carboxypeptidase A1 (pancreatic)

27872        154718        TPD52L2        9
tumor protein D52-like 2

683        125078        OAZ1        8
ornithine decarboxylase antizyme 1

22491        80686        PFDN5        8
prefoldin 5

28621        16758        Spir-1        8
Spir-1 protein

3065        268555        XRNZ        7
5'-3' exonuclease 2

11815        77965        CYP        7
Clk-associating RS-cyclophilin

17009        75447        RALBP1        7
ral binding protein 1

1089        79284        MEST        6
mesoderm specific transcript (mouse) homolog

11223        250        XDH        6
xanthene dehydrogenase

18203        151461        EED        6
embryonic ectoderm development

20930        7874        MKLN1        6
muskelin 1, intracellular mediator containing kelch motifs

22149        469        SDHA        6
succinate dehydrogenase complex, subunit A, flavoprotein (Fp)

1141        89525        HDGF        5
hepatoma-derived growth factor (high-mobility group protein 1-like)

3093        21858        TNRC3        5
trinucleotide repeat containing 3

3363        78575        PSAP        5
prosaposin (variant Gaucher disease and variant metachromatioc leukodystrophy)

3865        236361        HSRNASEB        5
Seb4D

4296        153221        SSXT        5
synovial sarcoma translocated to X chromosome

12468        152707        GBAS        5
glioblastoma amplified sequence

21802        6353        MRG15        5
MORF-related gene 15

22478        8740        BM029        5
uncharacterized bone marrow protein BM029

28750        13980        UTX        5
ubiquitously transcribed tetratricopeptide repeat gene, X chromosome

28979        75682        RCD-8        5
autoantigen

29174        78442        SREBP        5
cleavage activating protein

29879        82113        DUT        5
dUTP pyrophosphatase

730        169283        HUMNDME        4
NADP-dependent malic enzyme

2442        93659        ERP70        4
protein disulfide isomerase related protein (calcium-binding protein, intestinal related)

2701        181195        MRJ        4
MRJ gene for a member of the DNAJ protein family

6775        223014        LOC51582        4
antizyme inhibitor

21473        15627        NIT2        4
Nit protein 2

21686        32675        TBCE        4
tubulin-specific chaperone e

23219        206097        TC21        4
oncogene TC21

27809        277401        BAZ2A        4
bromodomain adjacent to zinc finger domain, 2A

27897        94        HSJ2        4
heat shock protein DNAJ-like 2

28502        7957        ADAR        4
adenosine deaminase, RNA specific

28797        75416        DAZAP2        4
DAZ associated protein

28805        145279        SET        4
SET translocation (myeloid leukemia-associated)

28808        91161        PFDN14        4
prefoldin 4

29988        281680        HSA250303        4
peroxosomal trans 2-enoyl CoA reductase; putative short chain alcohol dehydrogenase

30069        5437        TAX1BP1        4
Tax 1 (human T-cell leukemia virus type I) binding protein 1

35796        179747        EVI5        4
ecotropic viral integration site 5

38211        35093        LBC        4
lymphoid blast crisis oncogene

41853        279815        CSAD        4
cysteine sulfinic acid decarboxylase-related protein 2

808        57904        MAGOH        3
mago-nashi (Drosophila) homolog, proliferation-associated

826        166982        PIGF        3
phosphatidyl inositol glycan, class F

1989        76253        SCA2        3
spinocerebellar ataxia 2 (olivopontocerebellar ataxia 2, autosomal dominant, ataxin 2)

2585        75922        BRI3        3
brain protein I3

3131        74635        DLD        3
dihydrolipoamide dehydrogenase

3576        1708        CCT3        3
chaperonin containing TCP1, subunit 3 (gamma)

7880        262476        AMD1        3
S-adenosylmethionine decarboxylase 1

9307        89643        TKT        3
transketolase (Wernicke-Korsakoff syndrome)

18675        82314        HPRT1        3
hypoxanthine phosphoribosyl transferase 1 (Lesch-Nyhan syndrome)

18921        106357        VCP        3
valosin-containing protein

20294        118725        SPS2        3
selenophosphate synthetase 2

22179        26813        LOC51290        3
CDA14

22632        75725        TAGLN2        3
transgelin 2

27129        76173        HSU52521        3
arfaptin 1

28066        119222        ST13        3
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70-interacting protein)

29405        279919        RBX1        3
ring-box 1

29812        90606        SEP15        3
15kDa selenoprotein

29996        3229        CDO1        3
cysteine dioxygenase, type I

38579        47005        LRPDIT        3
low density lipoprotein receptor related protein-deleted in tumor

40285        166184        ITSN2        3
intersectin 2

42873        12461        LCHN        3
LCHN protein

140        100623        PLCB3NP        2
phospholipase C, beta 3, neighbor pseudogene

426        226795        GSTP1        2
glutathione S-transferase pi

757        77273        ARHA        2
RAS homolog gene family, member A

914        108809        CCT7        2
chaperonin containing TCP1, subunit 7 (eta)

1514        180878        LPL        2
lipoprotein lipase

1786        28914        APRT        2
adenine phosphoribosyl transferase

3238        83918        AMPD3        2
adenosine monophosphate deaminase (isoform E)

3830        754        FPGS        2
folylpolyglutamate synthase

4067        95697        LOC51599        2
LISCH protein

5567        75807        CLIM1        2
carboxyterminal LIM domain protein 1

6586        75108        RNH        2
ribonuclease/angiogenin inhibitor

7729        155247        ALDOC        2
aldolase C, fructose-bisphosphate

7821        16611        TPD52L1        2
tumor protein D52-like 1

12882        187579        HSD17B7        2
hydroxysteroid (17-beta) dehydrogenase 7

12970        1197        HSPE1        2
heat shock 10kD protein 1 (chaperonin 10)

14722        74405        YWHAQ        2
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide

15295        113        EPHX2        2
epoxide hydrolase 2, cytoplasmic

18161        3833        PAPSS1        2
3-prime-phosphoadenosine 5-prime-phosphosulfonate synthase 1

18688        74137        TMP21        2
transmembrane trafficking protein

18898        112594        LOC51230        2
hepatocellular carcinoma-associated antigen 58

19154        182217        SUCLA2        2
succinate-CoA ligase, ADP-forming, beta subunit

20921        70337        IGSF4        2
immunoglobulin superfamily, member 4

21119        76507        PIG7        2
LPS-induced TNF-alpha factor

21669        173611        NDUFS2        2
NADH dehydrogenase (ubiquitous) Fe-S protein (49kD) (NADH-coenzyme Q reductase)

24397        92381        NUDT4        2
nudix (nucleotide diphosphate linked moiety X)-type motif 4

24455        84318        RPA1        2
replication protein A1 (70kD)

24972        80680        MVP        2
major vault protein

25125        77498        PRPSAP1        2
phosphoribosyl pyrophosphate synthetase-associated protein 1

25319        106469        SUPV3L1        2
suppressor of var1 (S. cerevisiae)3-like 1

25412        227150        LSFR2        2
linked to Surfeit genes in Fugu rubripes 2; LSFR2 gene 2

26364        159140        B4GALT6        2
UDP-Gal: beta GlcNAc beta 1,4-galactosyltransferase, polypeptide 6

27424        111988        SET07        2
PR/SET domain containing protein 07

27836        104019        TACC3        2
transforming, acidic coiled-coil containing protein 3

28107        174185        ENPP2        2
ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin)

28219        227107        CDIPT        2
CDP-diacylglycerol-inositol 3-phosphatidylinositol synthase)

28962        154890        FACL2        2
fatty-acid-Coenzyme A ligase, long-chain 2

29131        31819        HT014        2
thioredoxin-related protein

29609        25664        DOC-1R        2
tumor suppressor deleted in oral cancer-related 1

29628        8526        BETA3GNTI        2
i-beta-1,3-N-acetylglucosaminyltransferase

29847        76038        IDI1        2
isopentenyl-diphosphate delta isomerase

30078        69469        GA17        2
dendritic cell protein

30728        208514 retired, 7351                2
cyclic AMP phosphoprotein, 19kD        ARPP-19

34879        127950        BRL        2
BR140-like gene

35105        19673        HSGT1        2
suppressor of S. cerevisiae gcr2

40331        194688        BAZ1B        2
bromodomain adjacent to zinc finger domain, 1B

43040        81964        SEC24C        2
SEC24 (S. cerevisiae) related gene family, member C

43591        7918        HSMNP1        2
uncharacterized hypothalamus protein

46676        183655        SEC22A        2
sec22 homolog

90115        12540        LYPLA1        2
lysophospholipase I

597        6793        PAFAH1B3        1
platelet activating factor acetylhydrolase, isoform Ib, gamma subuint (29kD)

1336        250502        CA8        1
carbonic anhydrase VIII

1777        79037        HSPD1        1
heat shock 60kD protein 1 (chaperonin)

1863        24930        TBCA        1
tubulin-specific chaperone a

2033        109760        NDUFB3        1
NADH dehydrogenase (ubiquinone) 1 beta complex, 3 (12kD, B12)

2118        77854        RGN        1
regucalcin (senescence marker protein-30)

2212        76768        P4HA1        1
procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide I

2733        81886        AUH        1
AU RNA-binding protein/enoyl Coenzyme A hydratase

2734        28491        SAT        1
spermidine/spermine N1-acetyltransferase

2817        12953        PPFIBP2        1
PTPRF interacting protein binding protein 2 (liprin beta 2)

3010        110837        FAAH        1
fatty acid amide hydrolase

3204        48876        FDFT1        1
farnesyl-diphosphate farnesyltransferase

3308        75544        YWHAH        1
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide

3317        183868        GUSB        1
gluconidase, beta

3401        94376        PCSK5        1
proprotein convertase subtilisin/kexin type 5

3439        172813        P85SPR        1
PAK interacting exchange factor beta

3496        138381        FNTA        1
farnesyltransferase CAAX box, alpha

3545        167927        ICA1        1
islet cell autoantigen 1 (69kD)

3655        172210        MUF1        1
MUF1 protein

3820        12492        LOC55907        1
CMP-N-acetylneuraminic acid synthase

3987        75279        LAMA2        1
lamina, alpha 2 (merosin, congenital muscular dystrophy)

4859        40500        RER1        1
similar to S.cerevisiae RER1

4877        11170        SIP        1
SYT interacting protein

6384        241363        HABP2        1
hyaluronan-binding protein 2

6874        3196        SURF1        1
surfeit 1

7046        118126        PPGB        1
protective protein for beta-galactosidase (galactosialidosis)

7138        261285        PLRG1        1
pleiotropic regulator 1 (PRL1, Arabidopsis homolog)

7508        268763        BCRP1        1
breakpoint cluster region protein, uterine leiomyoma 1; barrier to autointegration factor

9382        118131        MTHFS        1
5,10-methenyltetrahydrofolate synthetase (5-formyl tetrahydrofolate cyclo-ligase)

9738        180895        KIAA0765        1
putative brain nuclearly-targeted protein

9811        103180        DC2        1
DC2 protein

9859        82399        LDLC        1
low density lipoprotein receptor defect c complementing

10125        108881        CDV-1        1
CDV-1 protein

10709        28309        UGDH        1
UDP-glucose dehydrogenase

11204        69855        D1S155E        1
NRAS-related gene

11761        33251        PPIE        1
peptidylprolyl isomerase (cyclophilin E) E

12261        7833        SELENBP1        1
selenium binding protein 1

12975        78221        MYCBP        1
c-myc binding protein

14486        35660        BUP        1
BUP protein

14910        24485        CSPG6        1
chondroitin sulfate proteoglycan 6 (bamacan)

15259        75212        ODC1        1
ornithine decarboxylase 1

15622        81848        RAD21        1
RAD21 (S. pombe) homolog

16831        173724        CKB        1
creatine kinase, brain

17185        18069        PRSC1        1
protease, cysteine, 1 (legumain)

18096        271752        BPNT1        1
3'(2'), 5'-bisphosphate nucleotidase 1

18522        259785        CPT1A        1
carnitine palmitoyl transferase I, liver

19039        597        GOT1        1
glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)

19169        18792        TXNL        1
thioredoxin-like, 32kD

19187        250655        PTMA        1
prothymosin, alpha (gene sequence 28)

20260        150748        MLYCD        1
malonyl-CoA decarboxylase

20634        157113        COQ7        1
coenzyme Q, 7 (rat, yeast) homolog

20929        266933        HERC2        1
hect domain and RLD2

21145        92186        LCCP        1
Leman coiled-coil protein

21440        14089        QPP        1
quiescent cell proline dipeptidase

21537        75313        AKR1B1        1
aldo-keto reductase family 1, member B1 (aldose reductase)

21556        279607        CAST        1
calpastatin

21580        576        FUCA1        1
fucosidase, alpha-L-1, tissue

21652        8750        BM045        1
uncharacterized bone marrow protein BM045

22049        17409        CRIP1        1
cystine-rich protein (intestinal)

22147        13011        GTPBP2        1
GTP binding protein 2

22244        5542        TTC2        1
tetratricopeptide repeat domain 2

22508        247551        MTX1        1
metaxin 1

22596        264428        TSTA3        1
tissue specific transplantation antigen P35B

22691        129953        EWSR1        1
Ewing sarcoma breakpoint region 1

23335        206521        YME1L1        1
YME1 (S. cerevisiae)-like 1

23780        75880        PGD        1
phosphogluconate dehydrogenase

23814        184786        KIAA0829        1
TBP-interacting protein

24331        9893        LOC51130        1
ASB-3 protein

24611        64016        PROS1        1
protein S (alpha)

24680        258551        DNPEP        1
aspartyl aminopeptidase

24948        278675        BRD4        1
bromodomain-containing 4

25808        1435        GMPR        1
guanine monophosphate reductase

26166        75393        ACP1        1
acid phosphatase 1, soluble

27367        79021        TA2        1
tafazzin (cardiomyopathy, dilated 3A (X-linked); endocardial fibroelastosis 2; Barth syndrome

27689        6947        HYPB        1
huntingtin interacting protein B

27746        5198        DSCR2        1
Down syndrome critical region gene 2

27969        21293        UAP1        1
UDP-N-acetylglucosamine pyrophosphorylase 1

28052        28423        UBP1        1
upstream binding protein 1 (LBP-1a)

28188        83919        GCS1        1
glucosidase I

28293        198271        NDUFA10        1
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10 (42kD)

28301        19904        CTH        1
cystathionase (cystathionine gamma-lyase)

28366        1508        IDE        1
insulin-degrading enzyme

28440        89626        PTHLH        1
parathyroid hormone-like hormone

28518        10086        LOC51330        1
Fn14 for type I transmembrane protein

28659        13501        PES1        1
pescadillo (zebrafish) homolog 1, containing BRCT domain

28760        288031        SC5DL        1
sterol-C5-desaturase (fungal ERG3, delta-5 desaturase)-like

28867        1117        TPP2        1
tripeptidyl peptidase II

28950        15871        LOC51205        1
LPAP for lysophosphatidic acid phosphatase

28966        55601        HCF-2        1
host cell factor 2

28981        33642        ARCN1        1
archain 1

29016        86386        MCL1        1
myeloid cell leukemia sequence 1 (BCL-2 related)

29082        62180        LOC54443        1
anillin

29138        22857        CHP1        1
chord domain-containing protein 1

29201        1691        GBE1        1
glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV)

29381        119324        KNSL4        1
kinesin-like 4

29418        76901        PDIR        1
for protein disulfide isomerase-related

29450        55613        RCE1        1
prenyl protein protease RCE1

29601        138593        NT5B        1
5'-nucleotidase (purine), cytosolic type B

29794        1139        CSDA        1
cold shock domain protein

29815        77502        MAT2A        1
methionine adenosyl transferase II, alpha

29823        111811        MGST3        1
microsomal glutathione S-transferase 3

29824        132243        NPEPPS        1
aminopeptidase puromycin sensitive

30119        239926        SC4MOL        1
sterol-C4-methyl oxidase-like

30133        180859        LOC51142        1
16.7kD protein

30152        110347        REV1        1
REV1 protein

30263        11638        LOC51703        1
FACL5 for fatty acid coenzyme A ligase 5

31308        123036        ENTPD2        1
ectonucleoside triphosphate diphosphohydrolase 2

31436        104105        MEIS2        1
Meis (mouse) homolog 2

3261        201673        CNIL        1
cornichon-like

32906        170414        PACE4        1
paired basic amino acid cleaving system 4

34248        81988        DAB2        1
disabled (Drosophila) homolog 2 (mitogen-responsive phosphoprotein)

34663        24563        NXT1        1
NTF2-related export protein 1

34775        1023        PDHA1        1
pyruvate dehydrogenase (lipoamide) alpha 1

34830        75694        MPI        1
mannose phosphate isomerase

35853        240013        COMT        1
catechol-O-methyltransferase

36241        7771        REA        1
B-cell associated protein

36441        22934        LOC55892        1
myoneurin

38306        20815        EMP        1
macrophage erythroblast attacher

38929        41716        ESM1        1
endothelial cell-specific molecule

40124        128291        PDE10A        1
phosphodiesterase 10A

41494        18747        RPP20        1
POP7 (processing of precursor, S. cerevisiae) homolog

41502        75653        FH        1
fumarate hydratase

42188        155001        UNC13        1
UNC13 (c. elegans)-like

43745        247452        D6S82E        1
HLA-B associated transcript-5

45205        112594        LOC51230        1
hepatocellular carcinoma-associated antigen 58

46764        152981        CDS1        1
CDP-diacylglycerol synthase (phosphatidate cytidyl transferase) 1

86572        259737        FN5        1
FN5 protein

116015        279865        TPT        1
trans-prenyltransferase